Sequence Databases for training
Browse files
README.md
ADDED
|
@@ -0,0 +1,44 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
dataset_info:
|
| 3 |
+
features:
|
| 4 |
+
- name: sequence_id
|
| 5 |
+
dtype: int64
|
| 6 |
+
- name: dataset
|
| 7 |
+
dtype: string
|
| 8 |
+
- name: description
|
| 9 |
+
dtype: string
|
| 10 |
+
- name: label
|
| 11 |
+
dtype: string
|
| 12 |
+
- name: y
|
| 13 |
+
dtype: int64
|
| 14 |
+
- name: sequence
|
| 15 |
+
dtype: string
|
| 16 |
+
- name: __index_level_0__
|
| 17 |
+
dtype: int64
|
| 18 |
+
splits:
|
| 19 |
+
- name: ESCHERICHIA_SEQDB
|
| 20 |
+
num_bytes: 22428612
|
| 21 |
+
num_examples: 394
|
| 22 |
+
- name: EXTREMOPHILE_SEQDB
|
| 23 |
+
num_bytes: 739732
|
| 24 |
+
num_examples: 16
|
| 25 |
+
- name: BACPHLIP_TRAINING_SEQDB
|
| 26 |
+
num_bytes: 121740866
|
| 27 |
+
num_examples: 1868
|
| 28 |
+
- name: BACPHLIP_VALIDATION_SEQDB
|
| 29 |
+
num_bytes: 19956326
|
| 30 |
+
num_examples: 246
|
| 31 |
+
download_size: 76237700
|
| 32 |
+
dataset_size: 164865536
|
| 33 |
+
configs:
|
| 34 |
+
- config_name: default
|
| 35 |
+
data_files:
|
| 36 |
+
- split: ESCHERICHIA_SEQDB
|
| 37 |
+
path: data/ESCHERICHIA_SEQDB-*
|
| 38 |
+
- split: EXTREMOPHILE_SEQDB
|
| 39 |
+
path: data/EXTREMOPHILE_SEQDB-*
|
| 40 |
+
- split: BACPHLIP_TRAINING_SEQDB
|
| 41 |
+
path: data/BACPHLIP_TRAINING_SEQDB-*
|
| 42 |
+
- split: BACPHLIP_VALIDATION_SEQDB
|
| 43 |
+
path: data/BACPHLIP_VALIDATION_SEQDB-*
|
| 44 |
+
---
|
data/BACPHLIP_TRAINING_SEQDB-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e5ca1d2e7f6b3fa4c078cfb8c0373c2dac07c90a35e543ece315f106564bce62
|
| 3 |
+
size 56418904
|
data/BACPHLIP_VALIDATION_SEQDB-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c60b64e1980c3652bdb7adadd3e53773ec331f323c8623730f1b0cfe65f11f70
|
| 3 |
+
size 9315946
|
data/ESCHERICHIA_SEQDB-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3b9e2626427752f39ad275e91cbfbd3358c1c49598f80d10c8abda01ec830f53
|
| 3 |
+
size 10154617
|
data/EXTREMOPHILE_SEQDB-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:53e1da63677ab10a8a8fe59039019d25eccd00dad6b0c93960585146a1b7e94a
|
| 3 |
+
size 348233
|