I'm using a Lyx 2.0 for my thesis and I have a problem. The bibliography order is the bibliography order of figures index, and not the order of citations in text. Can I solve this?  I use an external file (by JabRef). An example:
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I am having an issue with LaTex/Bibtex presenting my citations in order of appearance. I know there a plenty of questions on this and I have read some of them, but the solutions posted don't seem to do me any good. I am using MacTeX and TeXmaker.  I am writing a large document, like a Thesis. Chapters are split between individual Tex files and included using the \include command.  I have a large .bib file that is maintained by Mendeley (program I use for storing my references and producing a BibTex file).  I am using the package, cite (mainly for doing references like [1-3,6,9])  I have a pretty standard looking document.  \documentclass[11pt,a4paper]{report} \setcounter{secnumdepth}{3} \setcounter{tocdepth}{3} \newcommand{\doubleSignature}[3][Alex Mason]{% \parbox{\textwidth}{ \centering #3 \today\\ \vspace{2cm}  \parbox{7cm}{   \centering   \rule{6cm}{1pt}\\    #1  } \hfill \parbox{7cm}{   \centering   \rule{6cm}{1pt}\\   #2 } } } \usepackage[utf8]{inputenc} \usepackage{amsmath} \usepackage{amsfonts} \usepackage{amssymb} %\usepackage[sorting=none]{biblatex} %\bibliography{Alex} % Where journals.bib and phd-references.bi \usepackage[pdftex]{graphicx} \usepackage{enumerate} \usepackage{nomencl} \usepackage{wasysym} \usepackage{booktabs} \usepackage{cite} \usepackage[left=1in,right=1in,top=1in,bottom=1in]{geometry} \graphicspath{{./Diagrams/}} \usepackage[labelfont={sf,bf}, margin=1cm]{caption} \usepackage{subcaption} \renewcommand{\figurename}{Fig.} \renewcommand{\tablename}{Tab.} \renewcommand{\bibname}{References} \author{NAME (MEng)} \title{TITLE} \date{\today} \makenomenclature %------------------------------------------------ \begin{document} \maketitle \pagenumbering{roman} %-----------------------------------------------certificate of originality----------------      -------------------------------------------- \input{CertofOrigin} \begin{abstract} ABSTRACT \end{abstract} %-----------------------------------------------contents------------------------------------------------------------ \tableofcontents \listoffigures \addcontentsline{toc}{chapter}{List of Figures} \listoftables \addcontentsline{toc}{chapter}{List of Tables} \chapter*{Acknowledgements} \addcontentsline{toc}{chapter}{Acknowledgements} ACKNOWLEDGEMENTS \printnomenclature[1.5in] \addcontentsline{toc}{chapter}{Nomenclature} \pagebreak \pagenumbering{arabic} \include{2ndYearReport_CHAP1} \include{2ndYearReport_CHAP2} \include{2ndYearReport_CHAP3} \bibliographystyle{unsrt} \bibliography{Alex} %\printbibliography \end{document}   The goofy looking part at the top (\newcommand{doubleSig.....) is just for when i input a special page I made containing a certificate of originality spiel with two boxes for signatures and my university logo.  As you can see I am using the standard bibtex way of doing bibliographies by stating the style then the stating the bib file to use right at the end of the document. I have tried biblatex but can't get it to work. It says it hasn't produced the bib file but doesn't really state why.  As far as I am aware everything was working A-OK until I started on the second chapter and began adding citations in there. Now my citations are all messed up and won't correct. My first citation starts with [9]!!!  [1] appears in a figure caption later down the page, after 10, 11 and 12 have been called!  I have tried deleting all the working files (bbl, aux, log etc) but nothing happens. I get the same result. IIRC I used to have this problem with MS Word and is part of the reason why I switched to LaTex...yet it seems to have followed me!   bibtex does through a few warnings when it runs stating that some references are missing journal names or volume numbers. Would that be a reason?  What have I done wrong with my code?
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My first steps with bibtex, with pdflatex on a linux machine.  I use \nocite{*} so that all references are printed, either cited or not.  All the bibliography style that I have found are sorting the references, either by alphabetic or order of appearance order, "features" that I would like to avoid.  Is there a way to preserve the original order of the .bib file ?  (I would like that citing references [1] to [999] does not turn to [1] to [2]).
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I need two bib-like sections: a "References" giving works explicitly cited in my text, and a "Bibliography" (or "Further reading" if you prefer) giving everything from my bibfile that didn't already appear in "References". The first is of course completely standard, but the second... I'm stumped.  Further loose constraints: I'm somewhat committed to biblatex and the biblatex-apa style. But I'll happily accept an answer not related to them if there's any chance I can adapt it.
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Sometimes I'd like to cite the reference in the caption of a graphic. But I want to avoid that this citation is displayed in the \listoffigures. How can I achieve that?  Fore example with this code:  \begin{figure}[htb] \centering \includegraphics{overview_pyramid.png} \caption{Overview pyramid \cite{LM2010}}\label{fg:overview_pyramid} \end{figure}
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I use Lyx 2.1, class document : report. I created a general introduction as unnumbered chapter, but at the table of Contents, the introduction does not exist.
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I would like to have a similar biblatex behaviour as described , i.e. separate bibliographies for different publication types, each bibliography should 1) be prefixed with a corresponding label (C for conference publications, J for journals etc), 2) sorted so that the newest entry is at the top (defined by the publication year) and 3) with reference numbers sorted in descending order per bibliography, i.e. the newest entry should have the highest number.  Journal articles ---------------- [J3]    reference from 2017 [J2]    reference from 2016 [J1]    reference from 2015  Conference publications ----------------------- [C4]    reference from 2017 [C3]    reference from 2017 [C2]    reference from 2016 [C1]    reference from 2015   I currently have the following:  \usepackage[backend=biber,         isbn=true,         giveninits=true,         style=numeric,         maxnames=99,         sorting=ydnt,         defernumbers=true,         autocite=superscript]{biblatex}  \subsection*{Journal articles} \begin{refcontext}[labelprefix=J] \printbibliography[type=article] \end{refcontext}  \subsection*{Conference publications} \begin{refcontext}[labelprefix=C] \printbibliography[type=inproceedings]   Separate bibliographies works fine, labelprefix also works as desired, sorting by year in descending order as well. However, if I try the solution mentioned in the above question I get very high reference numbers (in the 500s).  Is the above behaviour possible at all and, if yes, what is the most elegant solution using current biblatex etc.?  Thanks a lot in advance!
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I'm facing a problem with biblatex citation order.  Using this configuration:  \documentclass {article} \usepackage[brazil]{babel} \usepackage[utf8]{inputenc} \hyphenation{es-ta-bi-li-da-de} \usepackage{setspace} \singlespacing \usepackage[natbib=true,style=numeric]{biblatex} \addbibresource{frameworks.bib}   Being frameworks.bib this:  @Article{JONHSON88, author = {Ralph Johnson, Brian Foote}, title = {Designin Reusable Classes}, journal = {Journal of Object-Oriented Programming SIGS}, year = {1988}, key = {Johnson:88}, volume = {1}, number = {5}, pages = {22-35}, month = jun }  @book{UML-F:00, author = {Fontoura M., Pree W., Rumpe B.}, editor = {Addison-Wesley}, title = {The UML Profile for Framework Architectures}, year = {2000}, }   The PDF is generated with a text like:  Something about something[4], and moo foo other children[1].   This citation [4] is the first in all text. How can I order this correctly to [1]...[2] ...?
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How to run htlatex with biblatex bibliography included? That's the simplest example:  \documentclass{article}  \usepackage{biblatex} \addbibresource{libr.bib} \begin{document}  Text.\cite{dickens1881great}  \printbibliography \end{document}   I run in that way:  latex main biber main htlatex main   At the last stage htlatex asks about "Undefined control sequence":  \blx@begunit ...penalty \@M \hskip -\blx@unitmark                                                \relax \hskip \blx@unitmar... l.7 Text.\cite{dickens1881great}   And there's a lot of such errors in log file, but htlatex allows to skip them. Also, the html are not so good. Lack of punctuation, formatting:  &lt;p class="noindent" &gt;&lt;a   id="X0-dickens1881great"&gt;&lt;/a&gt;C.  Dickens&lt;span  class="cmti-10"&gt;Great Expectations&lt;/span&gt;Penguin  English  librarypt.  1Dent1881&lt;span  class="cmcsc-10"&gt;&lt;span  class="small-caps"&gt;u&lt;/span&gt;&lt;span  class="small-caps"&gt;r&lt;/span&gt;&lt;span  class="small-caps"&gt;l&lt;/span&gt;&lt;/span&gt;:     &lt;a  href="http://books.google.com/books?id=fhUXAAAAYAAJ" class="url" &gt;&lt;span  class="cmtt-10"&gt;http://books.google.com/books?id=fhUXAAAAYAAJ&lt;/span&gt;&lt;/a&gt;.   Is it the best result possible or I did something wrong?
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How can I generate a text-file (without any formatting) of the references used in a tex file?  This is needed quite often when submitting scientific papers to journals, because they want a separate list of the bibliography. However, if I turn the pdf file to a docx document, there is the problem that "ff" and "fi" in the text is not copied properly, so that a lot of manual corrections would be needed.  Does anyone know of a way to get the list of references either from the latex file or the pdf document?
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My promoteur has a very unusual requirement: the bibliography needs to be sorted first by specific type of referred item, next by author and by year of publication.   I managed to get this custom sorting done by using makebst and manually editing the .bst, but now there is even greater problem for me: the bibliography itself must be sectioned, so it should look something like this:    Sources  Aahn, A. 2008, whatever dude  Aahn, A. 2009, whatever dude, really  Dictionaries  Encyclopeadia of everythinga, 1999  Wikipaedia, 2000-today  Articles  Aahn, B. and Boss, C., 1889 This issue is not to our concern, good man  Other Materia  Bactera, E.C., 1987, How we totally not-wiped the whole earth.    Can this be done automagically with bibtex? Or do I have to edit the generated file manually?
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I was unable to find a previous post about this - perhaps too simple? I just came across the BibTeX and am trying to use it with an EndNote library. I have exported to the .bib file (which looks good as far as I can tell), but no bibliography is printed and the references aren't being cited. Obviously there is something major missing.  My document looks as follows.  \documentclass[11pt, fceqn]{article} \usepackage{epsfig} \usepackage{setspace, titlesec, caption, floatrow}    \usepackage{amsmath, amssymb, amsfonts, amsthm, cite, mathtools, lineno, subfig, natbib}  \begin{document}   Some text \cite{Alo_1}.  \bibliography{bib} \bibliographystyle{plain}  \end{document}   Any thoughts would be greatly appreciated.
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I'm writing my thesis and I would like to make 2 "bibliography" references: The first one would be for the publications I'm in and the second one for external references. I've made one *.bib file right now and it's working but I have no idea how I should work with 2 *.bib files.  Any suggestion will be appreciated.
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I've browsed the forums and found a number of posts that have addressed this issue, but none of the solutions seem to work for me. I have the following script that I just copied from the bibtex home page to get familiar with it. Instead of the citation number I get a question mark. I compile using Latex+Bibtex+Latex+Latex+PDFLatex+ViewPDF just as has been previously suggested and the problem persists.   \documentclass[11pt]{article} \usepackage{cite}  \begin{document}  \title{My Article} \author{Nobody Jr.} \date{Today} \maketitle  Blablabla said Nobody ~\cite{Nobody06}.  \bibliography{mybib} \bibliographystyle{plain} \end{document}   My bibliography (Bib.bbl)  @misc{ Nobody06, author = "Nobody Jr", title = "My Article", year = "2006" }    Looking at previous posts one thing that is concerning is that my .bbl looks empty as shown below. Further, I don't have a .blg  \begin{thebibliography}{}  \end{thebibliography}
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Question: What steps are required to use the xr package in LyX in order to reference items in other, independent LyX documents?  Steps already taken:   The tools package (that contains the xr package) has been installed in MikTeX. The xr package has been used in the referencing document (by adding \usepackage{xr} to the referencing document's preamble). A pointer to the referenced document has been set in the referencing document (by adding \externaldocument{referenced.lyx} to the referencing document's preamble). A label in the referenced document has been cross-referenced in the the referencing document using the \ref tag.   Observed (undesired) behavior: The reference appears as "BROKEN" in the LyX editor. The PDF output shows "??" where the reference number is expected.  Relevant links:       Software used: LyX + MiKTeX + BibTeX on Windows 7  My level of Lyx/LaTeX proficiency: Beginner+
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In my 'List of Figures' Chapter the data is listed in red, and with a reference to appropriate part of the pdf file. I suppose this is due to  \usepackage[colorlinks=true,linkcolor=red,citecolor=blue,urlcolor=black,pagebackref]{hyperref}   Note that red numbers are used to point to equations, and I would not like to change them. Also, it looks nice with \pagebackref. However, my List of Figures looks awkward, and I would like it to be written in plain black, possibly surrounded by blue rectangle. If that is not possible, then it is acceptable to make it just black, without any hyperref. How could this be achieved?
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I am having difficulties with setting up the layout of my bibliography. I would like to have a numeric style which does a none sorting so its order is as it appears in the text. Plus I would like my bibliography entry to look like this (so authoryear style):     References      [1] Surname, Y.G. Year. Title ...   I don't know what to do and can't come up with anymore keywords to look for it. I just started using biblatex.  My setup is as follows:  \documentclass[12pt,a4paper]{scrartcl} \usepackage[english]{babel} \usepackage[utf8]{inputenc} \usepackage{csquotes} \usepackage{textcomp} \usepackage{hyperref}  \usepackage[     backend=biber,     bibstyle=authoryear,     citestyle=numeric-comp     sorting=none, ]{biblatex}  \bibliography{mybib}  \begin{document}  Structures \cite{definition}  \newpage  \printbibliography  \end{document}
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Hi all I have a a preamble as follows but cannot seem to get the bibliography to appear in the table of contents:  %Loading in the packages \documentclass[12pt]{report} \usepackage[a4paper, width=150mm, top=25mm, bottom=25mm ,bindingoffset=6mm]{geometry} \usepackage{graphicx} \usepackage{titlesec} \usepackage{fancyhdr} \usepackage[backend=bibtex, style=alphabetic]{biblatex} \usepackage{courier} \usepackage[acronym, toc]{glossaries} \usepackage{listings} \usepackage{color} \usepackage[nottoc]{tocbibind} \graphicspath{{images/}} \addbibresource{references.bib}   then in the main body do the following roughly:  \begin{document} \maketitle  \tableofcontents  \listoffigures  \printglossary[type=\acronymtype,nonumberlist, style=custom_acronyms]  \chapter{test} \input{chapters/test}  \printbibliography  \end{document}   I successfully have items appearing in the bibliography and the bibliography displays without an issue but it doesn't appear in the table of contents although the list of figures and the glossary appear no issue! having so many issues with Latex sadly...  Any help would be much appreciated.